Nutrient mobilization and processing in Sonoran desert riparian soils following artificial re-wetting

Research in river-floodplain systems has emphasized the importance of nutrient delivery by floodwaters, but the mechanisms by which floods make nutrients available are rarely evaluated. Using a laboratory re-wetting experiment, we evaluated the alternative hypotheses that increased nutrient concentrations in riparian groundwater during flash floods are due to (H1) elevated nutrient concentrations in surface floodwaters entering the riparian zone or (H2) re-mobilization of nutrients from riparian soils. We sampled soils from the riparian zone of a 400m reach of Sycamore Creek, AZ. Two sub-samples from each soil were re-wetted with a solution that mimicked the chemistry of floodwaters, with one sub-sample simultaneously treated with a biocide. We also measured structural characteristics of soils (texture, organic matter, moisture, and extractable nutrients) to investigate relationships between these characteristics and response to re-wetting. Riparian soils exhibited considerable variation in physical and chemical structure. Soil organic matter, moisture, and texture co-varied among samples. Re-wetting increased concentrations of nitrate and ammonium, and decreased SRP, relative to initial concentrations. Live soils were significantly lower in NO3-and SRP than biocide-treated samples. Extractable DIN pools were the best predictors of mobilization, and soil organic matter was strongly correlated with nitrate losses, probably via its relationship with microbial uptake. Nutrient mobilization and processing also varied considerably with depth, lateral position, and among plots. We estimate that 70–80% of N in riparian groundwater during flash floods is re-mobilized from riparian soils, but are unable to reject the hypothesis that flood inputs may be important sources of nutrients to riparian soils over longer time scales.     

Is the Iron Gate I reservoir on the Danube River a sink for dissolved silica?

Damming rivers changes sediment and nutrient cycles downstream of a dam in many direct and indirect ways. The Iron Gates I reservoir on the Yugoslavian-Romanian border is the largest impoundment by volume on the Danube River holding 3.2billionm³ of water. Silica retention within the reservoir in the form of diatom frustules was postulated to be as high as 600ktyear^–1 in previous studies using indirect methods. This amount of dissolved silicate was not delivered to the coastal Black Sea, and presumably caused a shift in the phytoplankton community there, and subsequent drastic decline in fishery. We directly quantified the amount of dissolved silicate (DSi) entering and leaving the reservoir for 11 continuous months. The budget based on these data reveals two important facts: (1) only about 4% of incoming DSi was retained in the reservoir; (2) the DSi concentrations were relatively low in the rivers upstream of the reservoir compared to regional and global averages. Thus damming the Danube at the Iron Gates could not have caused the decline in DSi concentrations documented downstream of the impoundment. Rather, this change in DSi must have occurred in the headwaters of the Danube River. Potential reasons include the construction of many dams upstream of the Iron Gates, hydrologic changes resulting in lower groundwater levels, and clogging of the riverbed limiting groundwater–river exchange.     

Nitrogen processing in the hyporheic zone of a pastoral stream

The distribution of nitrogen-transforming processes, and factors controlling their rates, were determined within the hyporheic zone of a lowland stream draining agricultural land. In the field, physicochemical parameters were measured along a 10m-long hyporheic flow line between downwelling and upwelling zones. Sediment cores were retrieved from the stream bed surface, and from 20, 40 and 60cm deep in each zone, and in the laboratory, water from the corresponding depth was percolated through each core at the natural flow rate. Concentrations of nitrogen species and oxygen were measured before and after flow through each core. Denitrification was measured using a ¹⁵N-nitrate tracer. Shallow and downwelling zone samples were clearly distinct from deeper and upwelling zone samples in terms of physicochemical conditions, microbial processes and factors controlling nitrogen processing. Denitrification was highest in surface and downwelling zone cores, despite high oxygen levels, probably due to high pore-water nitrate concentrations in these cores and isolation of the denitrifying bacteria from oxygen in the bulk water by the hyporheic biofilms. Denitrification was limited by oxygen inhibition in the downwelling group, and by nitrate availability in the upwelling group. Strong evidence indicated that dissimilatory nitrate reduction to ammonium, occurred in almost all cores, and outcompeted denitrification for nitrate. In contrast, nitrification was undetectable in all but two cores, probably because of intense competition for oxygen. Field patterns and lab experiments indicated that the hyporheic zone at this moderately N-rich site is a strong sink for nitrate, fitting current theories that predict where hyporheic zones are nitrate sinks or nitrate sources.     

Influence of roots and climate on mineral and trace element storage and flux in tropical mangrove soils

The storage and flux of various mineral and trace elements in soils (0–30cm depth) were examined in relation to monsoonal rains and fine root biomass in four mangrove forests of different age and type in southern Thailand. The onset of the wet SW monsoon resulted in the percolation and dilution of porewater solutes by rainwater and by less saline tidal water, as indicated by shifts in Eh, pH and porewater SO₄/Cl ratios. This is contrary to temperate intertidal environments where seasonal patterns of porewater constituents, and biological and biogeochemical activities, are strongly cued to temperature. Fluxes across the soil–water interface were most often not statistically significant. Concentration of dissolved porewater metals were dominated by Fe, Mn, Al, Mo and Zn. The decreasing order of solid-phase element inventories in these soils, on average, was: Al, S, Fe, Na, Mg, K, Ca, N, P, Mn, V, Zn, Cr, Ni, As, Co, Cu, Pb, Mo, Cd and Hg. There were no gradients in concentrations of dissolved or solid-phase elements with increasing soil depth. This phenomenon was attributed to physical and biological processes, including the presence and activities of roots and tidal recharge of soil water. Fine dead roots were storage sites for most mineral and trace elements, as some elements in roots composed a significant fraction (5%) of the total soil pool. Analysis of S and Fe concentration differences between live and dead roots suggested extensive formation of pyrite associated with dead roots; correlation analysis suggested that trace metals coprecipitated with pyrite. An analysis of inventories and release/uptake rates indicate turnover of the N, P, Na and Ca soil pools equivalent to other tropical forests; turnover was slow (decades to centuries) for S, Fe, K and trace elements. Our results indicate that mineral and trace element cycling in these soils are characterized by net storage, with net accumulation of most elements much greater than uptake and release by tree roots.     

Merging aquatic and terrestrial perspectives of nutrient biogeochemistry

Although biogeochemistry is an integrative discipline, terrestrial and aquatic subdisciplines have developed somewhat independently of each other. Physical and biological differences between aquatic and terrestrial ecosystems explain this history. In both aquatic and terrestrial biogeochemistry, key questions and concepts arise from a focus on nutrient limitation, ecosystem nutrient retention, and controls of nutrient transformations. Current understanding is captured in conceptual models for different ecosystem types, which share some features and diverge in other ways. Distinctiveness of subdisciplines has been appropriate in some respects and has fostered important advances in theory. On the other hand, lack of integration between aquatic and terrestrial biogeochemistry limits our ability to deal with biogeochemical phenomena across large landscapes in which connections between terrestrial and aquatic elements are important. Separation of the two approaches also has not served attempts to scale up or to estimate fluxes from large areas based on plot measurements. Understanding connectivity between the two system types and scaling up biogeochemical information will rely on coupled hydrologic and ecological models, and may be critical for addressing environmental problems associated with locally, regionally, and globally altered biogeochemical cycles.We dedicate this paper to the memory of Catherine Lisa Dent, a member of our working group who contributed much to the ideas presented herein, and to the joy of developing them together.Due to an error in the citation line, this revised PDF (published in December 2003) deviates from the printed version, and is the correct and authoritative version of the paper.     

Mycorrhizal colonization mediated by species interactions in arctic tundra

The Alaskan tussock tundra is a strongly nutrient-limited ecosystem, where almost all vascular plant species are mycorrhizal. We established a long-term removal experiment to document effects of arctic plant species on ecto- and ericoid mycorrhizal fungi and to investigate whether species interactions and/or nutrient availability affect mycorrhizal colonization. The treatments applied were removal of Betula nana (Betulaceae, dominant deciduous shrub species), removal of Ledum palustre (Ericaceae, dominant evergreen shrub species), control (no removal), and each of these three treatments with the addition of fertilizer. After 3 years of Ledum removal and fertilization, we found that overall ectomycorrhizal colonization in Betula was significantly reduced. Changes in ectomycorrhizal morphotype composition in removal and fertilized treatments were also observed. These results suggest that the effect of Ledum on Betula 's mycorrhizal roots is due to sequestration of nutrients by Ledum, leading to reduced nutrient availability in the soil. In contrast, ericoid mycorrhizal colonization was not affected by fertilization, but the removal of Betula and to a lower degree of Ledum resulted in a reduction of ericoid mycorrhizal colonization suggesting a direct effect of these species on ericoid mycorrhizal colonization. Nutrient availability was only higher in fertilized treatments, but caution should be taken with the interpretation of these data as soil microbes may effectively compete with the ion exchange resins for the nutrients released by plant removal in these nutrient-limited soils.     

The sensing of nutritional status and the relationship to filamentous growth in Saccharomyces cerevisiae

Heterotrophic organisms rely on the ingestion of organic molecules or nutrients from the environment to sustain energy and biomass production. Non-motile, unicellular organisms have a limited ability to store nutrients or to take evasive action, and are therefore most directly dependent on the availability of nutrients in their immediate surrounding. Such organisms have evolved numerous developmental options in order to adapt to and to survive the permanently changing nutritional status of the environment. The phenotypical, physiological and molecular nature of nutrient-induced cellular adaptations has been most extensively studied in the yeast Saccharomyces cerevisiae. These studies have revealed a network of sensing mechanisms and of signalling pathways that generate and transmit the information on the nutritional status of the environment to the cellular machinery that implements specific developmental programmes. This review integrates our current knowledge on nutrient sensing and signalling in S. cerevisiae, and suggests how an integrated signalling network may lead to the establishment of a specific developmental programme, namely pseudohyphal differentiation and invasive growth.     

Effects of CO2 concentrations on the freshwater microalgae, Chlamydomonas reinhardtii, Chlorella pyrenoidosa and Scenedesmus obliquus (Chlorophyta)

In order to investigate the possible impacts of increased atmospheric CO₂ levels on algal growth and photosynthesis, the influence of CO₂ concentration was tested on three planktonic algae (Chlamydomonas reinhardtii, Chlorella pyrenoidosa, and Scenedesmus obliquus). Increased CO₂ concentration enhanced significantly the growth rate of all three species. Specific growth rates reached maximal values at 30, 100, and 60 M CO₂ in C. reinhardtii, C. pyrenoidosa, and S. obliquus, respectively. Such significant enhancement of growth rate with enriched CO₂ was also confirmed at different levels of inorganic N and P, being more profound at limiting levels of N inC. pyrenoidosa and P in S. obliquus. The maximal rates of net photosynthesis, photosynthetic efficiency and light-saturating point increased significantly (p < 0.05) in high-CO₂-grown cells. Elevation of the CO₂ levels in cultures enhanced the photoinhibition of C. reinhardtii, but reduced that of C. pyrenoidosa and S. obliquus when exposed to high photon flux density. The photoinhibited cells recovered to some extent (from 71% to 99%) when placed under dim light or in darkness, with better recovery in high-CO₂-grownC. pyrenoidosa and S. obliquus. Although pH and pCO₂ effects cannot be distinguished from this study, it can be concluded that increased CO₂ concentrations with decreased pH could affect the growth rate and photosynthetic physiology of C. reinhardtii, C. pyrenoidosa, and S. obliquus.